Stem-loop pab-MIR11454a

Accession

MI0036882

Description

Picea abies pab-MIR11454a precursor miRNA

Sequence

3933 reads, 173.0 reads per million, 75 experiments

ugauggcguaggaaucgcCCAGUUCGUGAAAUCUCUAAGugaagcguuauugccauggauguggcaagcuacaacgaagcuuuuccuCAGAGCUUUCACGAAUUGGGCaauuccuacagucgucg
.((((((((((((((.(((((((((((((((.((((.((.(((((....(((((((....)))))))...........)))))..)).)))).))))))))))))))).)))))))).)))))).

Structure

u      -        c               U    A  -u     -------guua       g 
 gauggc guaggaau gcCCAGUUCGUGAAA CUCU AG  gaagc           uugccau g
 |||||| |||||||| ||||||||||||||| |||| ||  |||||           |||||||  
 cugcug cauccuua CGGGUUAAGCACUUU GAGA uc  uuucg           aacggug a
g      a        a               C    C  cu     aagcaacaucg       u 

Annotation confidence High

Genome context

MA_5502715: 228-352 [+]

Mature pab-miR11454a-5p

• Accession: MIMAT0057679
• Description: Picea abies pab-miR11454a-5p mature miRNA
• Sequence: 19 - CCAGUUCGUGAAAUCUCUAAG - 39
• Evidence: experimental ; unknown

Mature pab-miR11454a-3p

• Accession: MIMAT0044980
• Description: Picea abies pab-miR11454a-3p mature miRNA
• Sequence: 88 - CAGAGCUUUCACGAAUUGGGC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918