Stem-loop pab-MIR11454b

Accession

MI0036883

Description

Picea abies pab-MIR11454b precursor miRNA

Sequence

3933 reads, 173.0 reads per million, 75 experiments

ugauggcguaggaaucgcCCAGUUCGUGAAAUCUCUAAGugaggcguucuugccauggauguggcaagcuacaacgaagccuuuccuCAGAGCUUUCACGAAUUGGGCaauuccuauagucgucg
.((((((((((((((.(((((((((((((((.((((.((.((((((((((((((((....))))))))....)))...)))))..)).)))).))))))))))))))).)))))))).)))))).

Structure

u      -        c               U    A  -u     ---   ----        g 
 gauggc guaggaau gcCCAGUUCGUGAAA CUCU AG  gaggc   guu    cuugccau g
 |||||| |||||||| ||||||||||||||| |||| ||  |||||   |||    ||||||||  
 cugcug uauccuua CGGGUUAAGCACUUU GAGA uc  uuccg   caa    gaacggug a
g      a        a               C    C  cu     aag   cauc        u 

Annotation confidence High

Genome context

MA_8661819: 2271-2395 [-]

Mature pab-miR11454b-5p

• Accession: MIMAT0057680
• Description: Picea abies pab-miR11454b-5p mature miRNA
• Sequence: 19 - CCAGUUCGUGAAAUCUCUAAG - 39
• Evidence: experimental ; unknown

Mature pab-miR11454b-3p

• Accession: MIMAT0044981
• Description: Picea abies pab-miR11454b-3p mature miRNA
• Sequence: 88 - CAGAGCUUUCACGAAUUGGGC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918