Stem-loop pab-MIR11457

Accession

MI0036887

Description

Picea abies pab-MIR11457 precursor miRNA

Sequence

70 reads, 23.0 reads per million, 29 experiments

ugccugcuuuucagguacguccgaCAUUAUAAUUCAAGAGCCGGCugcuggaguauaugcagaaaacaccuaugcccaugccucuuuacgagauuacacaagaagggccucuccauaaaccccuguucaaaucaacuggcucuugaacauuauaaucuccgacguagcugagaaaagggga
..(((..(((((((.((((((.((.(((((((((((((((((((..(((((.(((((.............)))))))).))(((.....)))...........((((.............))))...........)))))))))))..)))))))).)).)))))).)))))))..)))..

Structure

ug   gc       g      c  C        --           ----------------------------------------------------Cu  -   a     ugcag 
  ccu  uuuucag uacguc ga AUUAUAAU  UCAAGAGCCGG                                                      gc ugg guaua     a
  |||  ||||||| |||||| || ||||||||  |||||||||||                                                      || ||| |||||     a
  ggg  aagaguc augcag cu uaauauua  aguucucgguc                                                      cg acc cguau     a
ag   aa       g      c  c        ca           aacuaaacuuguccccaaauaccucuccgggaagaacacauuagagcauuucuc  u   -     ccaca 

Annotation confidence Not enough data

Genome context

MA_392655: 3929-4109 [-]

Mature pab-miR11457-5p

• Accession: MIMAT0044985
• Description: Picea abies pab-miR11457-5p mature miRNA
• Sequence: 25 - CAUUAUAAUUCAAGAGCCGGC - 45
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918