Stem-loop pab-MIR949c

Accession

MI0036896

Description

Picea abies pab-MIR949c precursor miRNA

Sequence

6092 reads, 319.0 reads per million, 64 experiments

gcugaaagaaugaaaacuUGUCCAGGAACCCAAUGAGCCuucgucuacuccugaacgccugcgaugcgugggagugagccguucaaacGAGGGCGCAUUGGGUUCCAagaaaagcucucguucucggu
(((((..((((((...(((.((..(((((((((((.((((((((((((((((..((((.......)))))))))).))........)))))))).)))))))))))..)).)))...)))))))))))

Structure

     aa      aaa   G  CA           A        --------  -      ga    cu 
gcuga  gaauga   cuU UC  GGAACCCAAUG GCCuucgu        cu acuccu  acgc  g
|||||  ||||||   ||| ||  ||||||||||| ||||||||        || ||||||  ||||  c
uggcu  cuugcu   gaa ag  CCUUGGGUUAC CGGGAGca        ga ugaggg  ugcg  g
     --      cuc   a  aA           G        aacuugcc  g      --    ua 

Annotation confidence Medium

Genome context

MA_872334: 1482-1609 [-]

Mature pab-miR949c-5p

• Accession: MIMAT0044994
• Description: Picea abies pab-miR949c-5p mature miRNA
• Sequence: 19 - UGUCCAGGAACCCAAUGAGCC - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR949c-3p

• Accession: MIMAT0057686
• Description: Picea abies pab-miR949c-3p mature miRNA
• Sequence: 89 - GAGGGCGCAUUGGGUUCCA - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918