Stem-loop pab-MIR11463

Accession

MI0036906

Description

Picea abies pab-MIR11463 precursor miRNA

Sequence

528 reads, 144.0 reads per million, 63 experiments

ugggguuuCUAAUAGCGAGCAUCUGGGCCucggagguuauucgaacaggaaguuguccucagaagcuauucgaacaggaaguugucuucaccuagagaaccgguaucaucgucuagaccuggacacaauuguccaggucuacaugaugAUACCGGAUCUCUAUGUGaggauaacuuccuguucgaauagccucggagccuggaggaccagaugcucgcuauuagaaacccca
((((((((((((((((((((((((((.((((..((((..(((((..((((.....)))).....(((((((((((((((((((((((((((.((((((.(((((((((((((.((((((((((((....)))))))))))).))))))))))))).)))))).))))))))))))))))))))))))))).))))))))).)))).))))))))))))))))))))))))))

Structure

                          G    gg    ua     acaggaaguuguccucagaa                           c      a             c            c 
ugggguuuCUAAUAGCGAGCAUCUGG CCuc  aggu  uucga                    gcuauucgaacaggaaguugucuucac uagaga ccgguaucaucgu uagaccuggaca a
|||||||||||||||||||||||||| ||||  ||||  |||||                    ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||  
accccaaagauuaucgcucguagacc ggag  uccg  aggcu                    cgauaagcuuguccuucaauaggaGUG AUCUCU GGCCAUAguagua aucuggaccugu a
                          a    -g    --     -------------------c                           U      A             c            u 

Annotation confidence Low

Genome context

MA_2424622: 76-307 [-]

Mature pab-miR11463-5p

• Accession: MIMAT0045004
• Description: Picea abies pab-miR11463-5p mature miRNA
• Sequence: 9 - CUAAUAGCGAGCAUCUGGGCC - 29
• Evidence: experimental ; Illumina [1]

Mature pab-miR11463-3p

• Accession: MIMAT0057690
• Description: Picea abies pab-miR11463-3p mature miRNA
• Sequence: 149 - AUACCGGAUCUCUAUGUG - 166
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918