Stem-loop pab-MIR11467a

Accession

MI0036910

Description

Picea abies pab-MIR11467a precursor miRNA

Sequence

13491 reads, 737.0 reads per million, 42 experiments

gugcuucaucccuccgAUAAGCUUUUCAGCGCGUUCACAguagaguuuauauuguagcucuucucaguccguucaggguagaguuuaugauguagauauguacagugacagCUGAAAAGCUUAUCGAAGGGAuugagcau
((((((.((((((.((((((((((((((((..((.(((.(((.((((((((((((((((((.(((.(......).))).)))).))))))))))))).).))).))))).)))))))))))))))).)))))).))))))

Structure

      c      c                GC  U   A   g -             -    u   a uc 
gugcuu aucccu cgAUAAGCUUUUCAGC  GU CAC gua a guuuauauuguag cucu cuc g  c
|||||| |||||| ||||||||||||||||  || ||| ||| | ||||||||||||| |||| ||| |   
uacgag uAGGGA GCUAUUCGAAAAGUCg  ca gug cau u uagauguaguauu gaga ggg c  g
      u      A                -a  -   a   g a             u    u   a uu 

Annotation confidence Medium

Genome context

MA_35889: 18663-18802 [-]

Mature pab-miR11467a-5p

• Accession: MIMAT0057692
• Description: Picea abies pab-miR11467a-5p mature miRNA
• Sequence: 17 - AUAAGCUUUUCAGCGCGUUCACA - 39
• Evidence: experimental ; unknown

Mature pab-miR11467a-3p

• Accession: MIMAT0045008
• Description: Picea abies pab-miR11467a-3p mature miRNA
• Sequence: 112 - CUGAAAAGCUUAUCGAAGGGA - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918