Stem-loop pab-MIR11467b

Accession

MI0036911

Description

Picea abies pab-MIR11467b precursor miRNA

Sequence

14769 reads, 779.0 reads per million, 42 experiments

gugcuucaucccuccgAUAAGCUUUUCAGCGUGUUCACAguagaguuuauauuguagcucuuuucaguccguucaggguagaguuuaugauauagcuauguacagugacagCUGAAAAGCUUAUCGAAGGGAucgagcac
((((((.((((((.((((((((((((((((.(((.(((.(((.(..(((((((((((((((.(((.(......).))).)))).)))))))))))...).))).)))))))))))))))))))))).)))))).))))))

Structure

      c      c                G   U   A   g -gu           -    u   a uc 
gugcuu aucccu cgAUAAGCUUUUCAGC UGU CAC gua a   uuauauuguag cucu uuc g  c
|||||| |||||| |||||||||||||||| ||| ||| ||| |   ||||||||||| |||| ||| |   
cacgag uAGGGA GCUAUUCGAAAAGUCg aca gug cau u   gauauaguauu gaga ggg c  g
      c      A                -   -   a   g auc           u    u   a uu 

Annotation confidence Medium

Genome context

MA_77911: 4276-4415 [-]

Mature pab-miR11467b-5p

• Accession: MIMAT0057693
• Description: Picea abies pab-miR11467b-5p mature miRNA
• Sequence: 17 - AUAAGCUUUUCAGCGUGUUCACA - 39
• Evidence: experimental ; unknown

Mature pab-miR11467b-3p

• Accession: MIMAT0045009
• Description: Picea abies pab-miR11467b-3p mature miRNA
• Sequence: 112 - CUGAAAAGCUUAUCGAAGGGA - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918