Stem-loop pab-MIR11473

Accession

MI0036917

Description

Picea abies pab-MIR11473 precursor miRNA

Sequence

1285 reads, 97.0 reads per million, 47 experiments

cugguuggcagcuuccguggugUUCGUGAUCAGGUUCAUUCGCuuacucacggaaaaggaaucgaaggagagugaagcgaaggaaccagaugacgaacgCCACUGAAGCAGCCAUGAG
((.((.(((.(((((.(((((((((((.(((.(((((.(((((((((((.(...............)..))))).)))))).))))).))).))))))))))).))))).))))).))

Structure

  g  u   a     c           G   A     A      -     -a ggaaaa 
cu gu ggc gcuuc guggugUUCGU AUC GGUUC UUCGCu uacuc  c      g
|| || ||| ||||| ||||||||||| ||| ||||| |||||| |||||  |      g
GA UA CCG CGAAG CACCgcaagca uag ccaag aagcga gugag  g      a
  G  -   A     U           g   a     g      a     ag aagcua 

Annotation confidence Low

Genome context

MA_7730120: 551-668 [-]

Mature pab-miR11473-5p

• Accession: MIMAT0045015
• Description: Picea abies pab-miR11473-5p mature miRNA
• Sequence: 23 - UUCGUGAUCAGGUUCAUUCGC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR11473-3p

• Accession: MIMAT0057696
• Description: Picea abies pab-miR11473-3p mature miRNA
• Sequence: 100 - CCACUGAAGCAGCCAUGAG - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918