Stem-loop pab-MIR11475

Accession

MI0036919

Description

Picea abies pab-MIR11475 precursor miRNA

Sequence

ugacuuucuuucuacuucugcccuucuuauccauuaaccauccuuugcuggagaguuucagccacauaacaagugguagggguguguguuucaacuaguagggguguguguuucaaaugcucaugaagguacaguggaaauauaugauuucacucugaauacaugggcuguugcaggagaccuguggagaauuuccaugauacugcagcaaaggGAUGUGCAAUAGGUAAGAAAGGuggaaguugaaagguagguaca
..((((((((((.(((((((((.((((((((.(((...((((((((((((.((.(((.(((((.(((.....(((...((((((((((((((.(((.(((...(((.(((((...))))).))).....)))))).))))))))......))))))...)))))))))))..(((((...)))))(((.....)))..))).)).))))))).)))))...))).)))))))).))))))))).)))))).))))...

Structure

-ug    -      u         c        c   aac     -       g  a   ---------------------------u     a   aacaa   gua      ------        a   a   --ggg   u     u 
   acuu ucuuuc acuucugcc uucuuauc auu   caucc uuugcug ag guu                            cagcc cau     gug   ggggug      uguguuuc acu gua     gug guguu  
   |||| |||||| ||||||||| |||||||| |||   ||||| ||||||| || |||                            ||||| |||     |||   ||||||      |||||||| ||| |||     ||| ||||| c
   ugga ggaaag ugaagguGG AAGAAUGG UAA   GUAGg aaacgac uc uag                            gucgg gua     cau   ucucac      auauaaag uga cau     uac cguaa  
aca    u      u         A        A   CGU     g       g  a   uaccuuuaagagguguccagaggacguu     -   -----   aag      uuuagu        g   -   ggaag   u     a 

Annotation confidence Not enough data

Genome context

MA_943799: 5725-5982 [+]

Mature pab-miR11475

• Accession: MIMAT0045017
• Description: Picea abies pab-miR11475 mature miRNA
• Sequence: 215 - GAUGUGCAAUAGGUAAGAAAGG - 236
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918