Stem-loop pab-MIR11476a

Accession

MI0036920

Description

Picea abies pab-MIR11476a precursor miRNA

Sequence

244535 reads, 6675.0 reads per million, 102 experiments

auuucGAUUGCAGUAGGGUUGUUUAGCagugaacaaacaacccauuuaauggacgggccugaucgcugcccauauugacauguccauucuauuuguuguguuuuacucuUAAGCAGCCCUUCUCCGAUCCAccu
.....(((((.((.((((((((((((.((((((...(((((..((..(((((((((((.........))))..........)))))))..))..)))))..)))))).)))))))))))).)).))))).....

Structure

auuuc     C  U            C      caa     cc  uu       ----------    cug 
     GAUUG AG AGGGUUGUUUAG agugaa   acaac  au  aauggac          gggc   a
     ||||| || |||||||||||| ||||||   |||||  ||  |||||||          ||||   u
     CUAGC UC UCCCGACGAAUu ucauuu   uguug  ua  uuaccug          cccg   c
uccAC     C  U            c      -ug     uu  uc       uacaguuaua    ucg 

Annotation confidence High

Genome context

MA_10433104: 2424-2557 [+]

Mature pab-miR11476a-5p

• Accession: MIMAT0045018
• Description: Picea abies pab-miR11476a-5p mature miRNA
• Sequence: 6 - GAUUGCAGUAGGGUUGUUUAGC - 27
• Evidence: experimental ; Illumina [1]

Mature pab-miR11476a-3p

• Accession: MIMAT0057697
• Description: Picea abies pab-miR11476a-3p mature miRNA
• Sequence: 110 - UAAGCAGCCCUUCUCCGAUCCA - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918