Stem-loop pab-MIR11478

Accession

MI0036923

Description

Picea abies pab-MIR11478 precursor miRNA

Sequence

3724 reads, 268.0 reads per million, 94 experiments

acuugcaggcucucugggGGAAGCCCAUGUCUGUAGAUUucaauucuauggccaguagcccaaguauugaacugaauugaauUCUGCAAAUCUGGGUUUCCCCuugagagucguaaagu
((((...(((((((.((((((((((((.((.((((((.((((((((...(..(((((.......)))))..).)))))))).)))))).)).)))))))))))).)))))))...))))

Structure

    gca       u            U  C      U        uau gc     gc 
acuu   ggcucuc gggGGAAGCCCA GU UGUAGA Uucaauuc   g  cagua  c
||||   ||||||| |||||||||||| || |||||| ||||||||   |  |||||  c
ugaa   cugagag uCCCCUUUGGGU UA ACGUCU aaguuaag   c  guuau  a
    aug       u            C  A      u        --u aa     ga 

Annotation confidence High

Genome context

MA_131684: 5123-5241 [+]

Mature pab-miR11478-5p

• Accession: MIMAT0045021
• Description: Picea abies pab-miR11478-5p mature miRNA
• Sequence: 19 - GGAAGCCCAUGUCUGUAGAUU - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR11478-3p

• Accession: MIMAT0057699
• Description: Picea abies pab-miR11478-3p mature miRNA
• Sequence: 83 - UCUGCAAAUCUGGGUUUCCCC - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918