Stem-loop pab-MIR11480

Accession

MI0036925

Description

Picea abies pab-MIR11480 precursor miRNA

Sequence

2186 reads, 153.0 reads per million, 93 experiments

cuucuCAGCCUUGUCCAAUUUGCCUUcuuugcauaagccauaugcccuaauauugucacauacagugcacuuauugaugguuucuguaagGGAGGCCAGUUGGACAAGGCUaagaag
(((((.((((((((((((((.((((((((((((.(((((((.........((((((.....)))))).........))))))).)))))))))))).)))))))))))))).)))))

Structure

     C              U            u       augcccuaa      c 
cuucu AGCCUUGUCCAAUU GCCUUcuuugca aagccau         uauugu a
||||| |||||||||||||| |||||||||||| |||||||         |||||| c
gaaga UCGGAACAGGUUGA CGGAGGgaaugu uuuggua         gugaca a
     a              C            c       guuauucac      u 

Annotation confidence Low

Genome context

MA_3131: 7567-7683 [+]

Mature pab-miR11480-5p

• Accession: MIMAT0057700
• Description: Picea abies pab-miR11480-5p mature miRNA
• Sequence: 6 - CAGCCUUGUCCAAUUUGCCUU - 26
• Evidence: experimental ; unknown

Mature pab-miR11480-3p

• Accession: MIMAT0045023
• Description: Picea abies pab-miR11480-3p mature miRNA
• Sequence: 91 - GGAGGCCAGUUGGACAAGGCU - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918