Stem-loop pab-MIR11481a

Accession

MI0036928

Description

Picea abies pab-MIR11481a precursor miRNA

Sequence

2957 reads, 114.0 reads per million, 56 experiments

gcagcccgucagcugugagcUUCGAUCGUCUCGAUGCGCUUggacucccgcaguucccacaccuucgcgcuuuuauaccacgaucgggccguggaaagugugggaccugguggaguccaaGUGCAUCGAGACGGUCGGAAGCucacagcugaggccgu
((.(((..((((((((((((((((((((((((((((((((((((((((..(((.((((((((.(((((((((.............))).))))))..)))))))).)))..))))))))))))))))))))))))).)))))))))))))))))).))

Structure

  a   cg               -                         cg   u        -c      -   uuaua 
gc gcc  ucagcugugagcUUC GAUCGUCUCGAUGCGCUUggacucc  cag ucccacac  uucgcg cuu     c
|| |||  ||||||||||||||| |||||||||||||||||||||||||  ||| ||||||||  |||||| |||     c
ug cgg  agucgacacuCGAAG CUGGCAGAGCUACGUGaaccugagg  guc agggugug  aggugc ggg     a
  c   --               G                         ug   c        aa      c   cuagc 

Annotation confidence Medium

Genome context

MA_170865: 11115-11272 [-]

Mature pab-miR11481a-5p

• Accession: MIMAT0057702
• Description: Picea abies pab-miR11481a-5p mature miRNA
• Sequence: 21 - UUCGAUCGUCUCGAUGCGCUU - 41
• Evidence: experimental ; unknown

Mature pab-miR11481a-3p

• Accession: MIMAT0045026
• Description: Picea abies pab-miR11481a-3p mature miRNA
• Sequence: 121 - GUGCAUCGAGACGGUCGGAAGC - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918