Stem-loop pab-MIR11431b

Accession

MI0036934

Description

Picea abies pab-MIR11431b precursor miRNA

Sequence

64673 reads, 1841.0 reads per million, 102 experiments

gaauucuaugaacauguUAACUAAUGCAUUCAACUGUCCaauauucucagguaccagucuuguaagauuuauugcaacaauuucuggugaggauuauuguaagcucacauugcaggccaguccuuaagagcuuacaauaauccuuuuguugucagaaauuugugaggaguuuacAGGAUCUACAUUUGAGCAUAUugaacaguugaaugcuaguuaauauguaagcagaauuc
(((((((.(..((((((((((((..((((((((((((.((((((.(((((((....((((((((.(((((.((((((..(((((((((((((((((((((((((((...(((.(((.....)))))))))))))))))))))))).....))))))))))))))).)))))))))))))....))))))).)))))).))))))))))))))))))))))))..).)))))))

Structure

       a ga            AU            C      u       acca        a     a      ca         -----                  aca   c   c 
gaauucu u  acauguUAACUA  GCAUUCAACUGU Caauau cucaggu    gucuugua gauuu uugcaa  auuucuggu     gaggauuauuguaagcuc   uug agg c
||||||| |  ||||||||||||  |||||||||||| |||||| |||||||    |||||||| ||||| ||||||  |||||||||     ||||||||||||||||||   ||| ||| a
cuuaaga g  uguauaauugau  cguaaguugaca guUAUA GAGUUUA    UAGGAcau uugag aguguu  uaaagacug     uuccuaauaacauucgag   aau ucc g
       c aa            --            a      C       CAUC        -     g      --         uuguu                  ---   -   u 

Annotation confidence Low

Genome context

MA_13504: 13885-14117 [+]

Mature pab-miR11431b-5p

• Accession: MIMAT0045032
• Description: Picea abies pab-miR11431b-5p mature miRNA
• Sequence: 18 - UAACUAAUGCAUUCAACUGUCC - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR11431b-3p

• Accession: MIMAT0057705
• Description: Picea abies pab-miR11431b-3p mature miRNA
• Sequence: 175 - AGGAUCUACAUUUGAGCAUAU - 195
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918