Stem-loop pab-MIR11408c

Accession

MI0036936

Description

Picea abies pab-MIR11408c precursor miRNA

Sequence

561 reads, 38.0 reads per million, 74 experiments

ggauagcacuagcacaaacccaucUAAUCUCGGGUCUGAUAUUCCccucgagguugcaaagccagauauaucccaccaugauucaauggaauacuugugugaacucaagauauacauauauccucaagcuuugcaaucugaaggugcauAUCAAACCCGAGUCUAGAUGGgucuguguuaguguccauauuc
((...(((((((((((.(((((((((..(((((((.((((((.(.(((..((((((((((((..(((((((....((((......)))).(((((((........)))).)))..))))))).....))))))))))))..))).).)))))).)))))))..))))))))).)))))))))))))......

Structure

------  aua           a         AU       C      U C   cg            ---ca       cccaccaugauucaaugga   -    ugu 
      gg   gcacuagcaca acccaucUA  CUCGGGU UGAUAU C ccu  agguugcaaagc     gauauau                   aua cuug   g
      ||   ||||||||||| |||||||||  ||||||| |||||| | |||  ||||||||||||     |||||||                   ||| ||||    
      cc   ugugauugugu ugGGUAGAU  GAGCCCA ACUAua g gga  ucuaacguuucg     cuauaua                   uau gaac   a
cuuaua  ---           c         CU       A      c u   ag            aacuc       -----------------ca   a    uca 

Annotation confidence Low

Genome context

MA_10429538: 7886-8077 [-]

Mature pab-miR11408c-5p

• Accession: MIMAT0045034
• Description: Picea abies pab-miR11408c-5p mature miRNA
• Sequence: 25 - UAAUCUCGGGUCUGAUAUUCC - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR11408c-3p

• Accession: MIMAT0057707
• Description: Picea abies pab-miR11408c-3p mature miRNA
• Sequence: 150 - AUCAAACCCGAGUCUAGAUGG - 170
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918