Stem-loop pab-MIR1312c

Accession

MI0036940

Description

Picea abies pab-MIR1312c precursor miRNA

Literature search

1 open access papers mention pab-MIR1312c
(2 sentences)

Sequence

129316 reads, 3123.0 reads per million, 102 experiments

uccaacagcaucuaugagguGAUUUUCUCUUCCAAUUAUGCcauuuauucuguauucaaauuuggagaagcagugagacgacuucaacauuaaucaaaaguggagagaguuauuuguuauugcaacacgggaaagagccucuuuccaauugugguuuuaaguaguguuggggucguauuguugcuuuuguuugagagaaaaugaugguagcucugauuucaaguaaguaggaguuaugcaUAAUUGGGAGAGAAAAUUGCCacguaaauguuguucggg
.((((((((((.((((.((((((((((((((((((((((((((((..((((...(((((((....(((((((((((.(((((((((((((((((((....(((((((((...(((....(((.....)))...)))..)))))))))....))))......))))))))))))))).))))))))))))))))))))))...))))((((((((.((((.....)))).)))))))))))))))))))))))))))))))).)))).)))))))).)).

Structure

u  -        c    a                        -------------------------------    -ua    gua       uugg           g               ------    aaag         uua   guua   c 
 cc aacagcau uaug gguGAUUUUCUCUUCCAAUUAUGC                               cauu   uucu   uucaaau    agaagcaguga acgacuucaacauua      auca    uggagagag   uuu    uug a
 || |||||||| |||| ||||||||||||||||||||||||                               ||||   ||||   |||||||    ||||||||||| |||||||||||||||      ||||    |||||||||   |||    ||| a
 gg uuguugua augc CCGUUAAAAGAGAGGGUUAAUacg                               guag   aaga   gaguuug    uuuucguuguu ugcugggguugugau      uggu    accuuucuc   aga    ggc c
g  c        a    a                        uauugaggaugaaugaacuuuagucucgaug    uaa    ---       ----           a               gaauuu    guua         -cg   -aag   a 

Annotation confidence High

Genome context

MA_518: 27752-28030 [+]

Mature pab-miR1312c-5p

• Accession: MIMAT0057711
• Description: Picea abies pab-miR1312c-5p mature miRNA
• Sequence: 21 - GAUUUUCUCUUCCAAUUAUGC - 41
• Evidence: experimental ; unknown

Mature pab-miR1312c-3p

• Accession: MIMAT0045038
• Description: Picea abies pab-miR1312c-3p mature miRNA
• Sequence: 241 - UAAUUGGGAGAGAAAAUUGCC - 261
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918