Stem-loop pab-MIR11487a

Accession

MI0036943

Description

Picea abies pab-MIR11487a precursor miRNA

Sequence

110884 reads, 4238.0 reads per million, 102 experiments

aggagcgcaggagagcUAGAGGCAGACUGAGAAGGCCaucaacaugaucauaauaauggaucgucuccgcugcuuuaugaauaacgccgacgaauaaaacuggugcccacacacagcagcaauauuuucaucagauugaucACCUUCUCAGUCUGCCUCUUGuccuccucagcccu
(((.((..(((((.((.((((((((((((((((((..(((((..((((...((((..(((.....)))((((((...((.....(((((...........)))))....))...))))))..))))...))))..)))))..)))))))))))))))))).)).)))))..)))))

Structure

   a  gc     a  U                  CC     ca    cau    auggaucgucucc      uua  aauaa     acga 
agg gc  aggag gc AGAGGCAGACUGAGAAGG  aucaa  ugau   aaua             gcugcu   ug     cgccg    a
||| ||  ||||| || ||||||||||||||||||  |||||  ||||   ||||             ||||||   ||     |||||    u
ucc cg  uccuc uG UCUCCGUCUGACUCUUCC  uaguu  acua   uuau             cgacga   ac     guggu    a
   -  ac     c  U                  Ac     ag    cuu    -----------aa      cac  -accc     caaa 

Annotation confidence Medium

Genome context

MA_26414: 8286-8461 [+]

Mature pab-miR11487a-5p

• Accession: MIMAT0045041
• Description: Picea abies pab-miR11487a-5p mature miRNA
• Sequence: 17 - UAGAGGCAGACUGAGAAGGCC - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR11487a-3p

• Accession: MIMAT0057713
• Description: Picea abies pab-miR11487a-3p mature miRNA
• Sequence: 142 - ACCUUCUCAGUCUGCCUCUUG - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918