Stem-loop pab-MIR11489

Accession

MI0036945

Description

Picea abies pab-MIR11489 precursor miRNA

Sequence

1228 reads, 135.0 reads per million, 69 experiments

gaaaaacaacuuuucguagagcgcaUAGAUCUCCAACGAACCGAAUugucuugaaguuacugugauuugaaaauaacuuuaggaugauUCGGUCCGUCGGAGAUCUACacgcucuacgaagaguuuuuuuc
((((((.((((((((((((((((..(((((((((.(((.((((((((((((((((((((...(......)...)))))))))))))))))))).))).)))))))))..))))))))))))))))))))))

Structure

      c                ca         A   A                    cug ga 
gaaaaa aacuuuucguagagcg  UAGAUCUCC ACG ACCGAAUugucuugaaguua   u  u
|||||| ||||||||||||||||  ||||||||| ||| ||||||||||||||||||||   |   
cuuuuu uugagaagcaucucgc  AUCUAGAGG UGC UGGCUuaguaggauuucaau   a  u
      -                aC         C   C                    aaa gu 

Annotation confidence Medium

Genome context

MA_2703: 9120-9250 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11489

Mature pab-miR11489-5p

• Accession: MIMAT0045043
• Description: Picea abies pab-miR11489-5p mature miRNA
• Sequence: 26 - UAGAUCUCCAACGAACCGAAU - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR11489-3p

• Accession: MIMAT0057714
• Description: Picea abies pab-miR11489-3p mature miRNA
• Sequence: 89 - UCGGUCCGUCGGAGAUCUAC - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918