Stem-loop pab-MIR11492

Accession

MI0036949

Description

Picea abies pab-MIR11492 precursor miRNA

Sequence

231 reads, 37.0 reads per million, 55 experiments

uucucgaaauucaaaaggAAGAACCAAAUUUCCACUAAUauacuugcaguuaauaaaacaguagagaucuuauggggaauuuuauuaucugcaaauauauUAGUGGAAAUUUGGUUUUUUCcguugaauuucaagaa
.(((.(((((((((..((((((((((((((((((((((((((.((((((.((((((((((..((....))..)).....)))))))).)))))).))))))))))))))))))))))))))..))))))))).))).

Structure

u   c         aa                          c      u        -----  gu  a 
 ucu gaaauucaa  ggAAGAACCAAAUUUCCACUAAUaua uugcag uaauaaaa     ca  ag g
 ||| |||||||||  |||||||||||||||||||||||||| |||||| ||||||||     ||  ||  
 aga cuuuaaguu  CUUUUUUGGUUUAAAGGUGAUuauau aacguc auuauuuu     gu  uc a
a   a         gc                          a      u        aaggg  au  u 

Annotation confidence High

Genome context

MA_42319: 10061-10197 [-]

Mature pab-miR11492-5p

• Accession: MIMAT0057717
• Description: Picea abies pab-miR11492-5p mature miRNA
• Sequence: 19 - AAGAACCAAAUUUCCACUAAU - 39
• Evidence: experimental ; unknown

Mature pab-miR11492-3p

• Accession: MIMAT0045047
• Description: Picea abies pab-miR11492-3p mature miRNA
• Sequence: 101 - UAGUGGAAAUUUGGUUUUUUC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918