Stem-loop pab-MIR11493a

Accession

MI0036950

Description

Picea abies pab-MIR11493a precursor miRNA

Sequence

9034 reads, 303.0 reads per million, 93 experiments

auugUAGUGUUGAGAAGAUUGAGGAagggauuuaggcugagcaaguccaauccuauuauauuuuugcucgaaggagaacauuuuuccacucgucuuccaaaucucuuccACAAUCUUCUCAACACUACAAu
(((((((((((((((((((((.(((((((((((((((((((((((.................))))))))..((((((...))))))....))))...))))))))))).)))))))))))))))))))))

Structure

                     A           ---    ---------------------        uccaauc 
auugUAGUGUUGAGAAGAUUG GGAagggauuu   aggc                     ugagcaag       c
||||||||||||||||||||| |||||||||||   ||||                     ||||||||       u
uAACAUCACAACUCUUCUAAC ccuucucuaaa   ucug                     gcucguuu       a
                     A           ccu    cucaccuuuuuacaagaggaa        uuauauu 

Annotation confidence Medium

Genome context

MA_9981896: 2255-2385 [-]

Mature pab-miR11493a-5p

• Accession: MIMAT0045048
• Description: Picea abies pab-miR11493a-5p mature miRNA
• Sequence: 5 - UAGUGUUGAGAAGAUUGAGGA - 25
• Evidence: experimental ; Illumina [1]

Mature pab-miR11493a-3p

• Accession: MIMAT0057718
• Description: Picea abies pab-miR11493a-3p mature miRNA
• Sequence: 110 - ACAAUCUUCUCAACACUACAA - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918