Stem-loop pab-MIR11493b

Accession

MI0036951

Description

Picea abies pab-MIR11493b precursor miRNA

Sequence

8608 reads, 413.0 reads per million, 91 experiments

gcagaguugUAGUGUUGAGAAGAUUGAGGAaggaauuuaaggcaaaacaaguccaguccuauuaacuucgagcucgaaggcgaauuuuuuccacucgaucugccaaaucucuuccacgaucuuCUCAACACUACAAUUCCGC
((.(((((((((((((((((((((((.((((((.((((..((((...(.(((.............(((((....))))).............))).)...)))))))).)))))).))))))))))))))))))))))).))

Structure

  a                       A      a    aa    aaa a   ccaguccuauuaa     a 
gc gaguugUAGUGUUGAGAAGAUUG GGAagg auuu  ggca   c agu             cuucg g
|| ||||||||||||||||||||||| |||||| ||||  ||||   | |||             |||||  
CG CUUAACAUCACAACUCuucuagc ccuucu uaaa  ccgu   g uca             gaagc c
  C                       a      c    --    cua c   ccuuuuuuaagcg     u 

Annotation confidence Low

Genome context

MA_60316: 4700-4841 [-]

Mature pab-miR11493b-5p

• Accession: MIMAT0045049
• Description: Picea abies pab-miR11493b-5p mature miRNA
• Sequence: 10 - UAGUGUUGAGAAGAUUGAGGA - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR11493b-3p

• Accession: MIMAT0057719
• Description: Picea abies pab-miR11493b-3p mature miRNA
• Sequence: 124 - CUCAACACUACAAUUCCGC - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918