Stem-loop pab-MIR11493c

Accession

MI0036952

Description

Picea abies pab-MIR11493c precursor miRNA

Sequence

8641 reads, 413.0 reads per million, 91 experiments

gcagaguugUAGUGUUGAGAAGAUUGAGGAaggaauuuaaggcaaagcaaguccaguccuauuaucuucgagcucgaaggagaagcuuuuccacucgaucugccaaaucuuuuccacgaucuuCUCAACACUACAAUUCCGC
((.(((((((((((((((((((((((.((((((.((((..((((...(.(((............((((((....))))))............))).)...)))))))).)))))).))))))))))))))))))))))).))

Structure

  a                       A      a    aa    aag a   ccaguccuauua      a 
gc gaguugUAGUGUUGAGAAGAUUG GGAagg auuu  ggca   c agu            ucuucg g
|| ||||||||||||||||||||||| |||||| ||||  ||||   | |||            ||||||  
CG CUUAACAUCACAACUCuucuagc ccuuuu uaaa  ccgu   g uca            ggaagc c
  C                       a      c    --    cua c   ccuuuucgaaga      u 

Annotation confidence Low

Genome context

MA_7069: 30662-30803 [+]

Mature pab-miR11493c-5p

• Accession: MIMAT0045050
• Description: Picea abies pab-miR11493c-5p mature miRNA
• Sequence: 10 - UAGUGUUGAGAAGAUUGAGGA - 30
• Evidence: experimental ; Illumina [1]

Mature pab-miR11493c-3p

• Accession: MIMAT0057720
• Description: Picea abies pab-miR11493c-3p mature miRNA
• Sequence: 124 - CUCAACACUACAAUUCCGC - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918