Stem-loop pab-MIR11495

Accession

MI0036954

Description

Picea abies pab-MIR11495 precursor miRNA

Sequence

535 reads, 32.0 reads per million, 60 experiments

ggcaaaucuuaagcaccagacagAUUUGGCAUAAAUGUAGGUGGaaccuugauuuuuagcaagguuucaggcaggcccuuggaaccuugauguaacagguuuucugccuggaaccuugcaaaacaucaagguuccaccugcauuUAUAGCAAGUCUGUCUGGUGCucaagguuugcu
((((((((((.(((((((((((((((((..(((((((((((((((((((((((.(((.(((((((((((((((((..((((..((......))..))))...))))))))))))))))).))).)))))))))))))))))))))))..))))))))))))))))).))))))))))

Structure

          a                 GC                       u   a                 -cc    ga  cu 
ggcaaaucuu agcaccagacagAUUUG  AUAAAUGUAGGUGGaaccuugau uuu gcaagguuucaggcagg   cuug  ac  u
|||||||||| |||||||||||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||   ||||  ||   
ucguuuggaa uCGUGGUCUGUCUGAAC  UAUuuacguccaccuuggaacua aaa cguuccaagguccgucu   ggac  ug  g
          c                 GA                       c   a                 uuu    aa  ua 

Annotation confidence Low

Genome context

MA_52027: 6052-6228 [-]

Mature pab-miR11495-5p

• Accession: MIMAT0057722
• Description: Picea abies pab-miR11495-5p mature miRNA
• Sequence: 24 - AUUUGGCAUAAAUGUAGGUGG - 44
• Evidence: experimental ; unknown

Mature pab-miR11495-3p

• Accession: MIMAT0045052
• Description: Picea abies pab-miR11495-3p mature miRNA
• Sequence: 145 - UAUAGCAAGUCUGUCUGGUGC - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918