Stem-loop pab-MIR11496

Accession

MI0036955

Description

Picea abies pab-MIR11496 precursor miRNA

Sequence

6775 reads, 228.0 reads per million, 58 experiments

gcauggagugccagagcguuuuaugCAGCCAAGAAUGACUUGCCgacacgcugcucugaucuguguuugcagcucuaauguguucauguacguuuauuauuguuuuucugaguugcagacauauguuacucgagucgugggcaaguuguucuugacuacaUAUAGCGCUCUGGUUCUCAUGc
(((((.((.(((((((((((.((((.((.(((((((((((((((..((((..((((((((.((((((((((((((.((((((......))))))...............)))))))))))))).))))...))))))))))))))))))))))).)).)))).))))))))))).)))))))

Structure

     g  u           u    C  C               ga    cu    ---    c              --------------u      uu 
gcaug ag gccagagcguu uaug AG CAAGAAUGACUUGCC  cacg  gcuc   ugau uguguuugcagcuc               aaugug  c
||||| || ||||||||||| |||| || |||||||||||||||  ||||  ||||   |||| ||||||||||||||               ||||||   
cGUAC UC UGGUCUCGCGA AUac uc guucuuguugaacgg  gugc  ugag   auug auacagacguugag               uugcau  a
     -  U           U    a  a               --    --    cuc    u              ucuuuuuguuauuau      gu 

Annotation confidence Low

Genome context

MA_101138: 4431-4612 [-]

Mature pab-miR11496-5p

• Accession: MIMAT0057723
• Description: Picea abies pab-miR11496-5p mature miRNA
• Sequence: 26 - CAGCCAAGAAUGACUUGCC - 44
• Evidence: experimental ; unknown

Mature pab-miR11496-3p

• Accession: MIMAT0045053
• Description: Picea abies pab-miR11496-3p mature miRNA
• Sequence: 161 - UAUAGCGCUCUGGUUCUCAUG - 181
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918