Stem-loop pab-MIR11499b

Accession

MI0036959

Description

Picea abies pab-MIR11499b precursor miRNA

Sequence

1395 reads, 191.0 reads per million, 64 experiments

ucaugugggaucuugcaUGAAAGGCCACAGUAGGUGAUGgagccaaggaugauuugccgacauccacucauaaucugucuggacaaaugcauauuguacaugacgucaugauagggaaggaaguuGGCAAUUUGUCCUUGGCUACAuaucuugcugugcuucucaugccagaccuuagauga
((((.((((.(((.((((((.((((.((((((((..(((.((((((((((((.((((((((.(((..((....((((((..(((..(((.........)))...)))..)))))))).))).)))))))).)))))))))))).)))..)))))))))))).)))))).))).)))).))))

Structure

    g    a   u      A    C        UG   g            u        a   ac  auaa      ug   -aa   cau 
ucau uggg ucu gcaUGA AGGC ACAGUAGG  AUG agccaaggauga uugccgac ucc  uc    ucuguc  gac   aug   a
|||| |||| ||| |||||| |||| ||||||||  ||| |||||||||||| |||||||| |||  ||    ||||||  |||   |||   u
agua auuc aga cguacu uucg ugucguuc  uAC UCGGUUCCUGUU AACGGuug agg  ag    ggauag  cug   uac   u
    g    c   c      c    -        ua   A            U        a   -a  ----      ua   cag   aug 

Annotation confidence Medium

Genome context

MA_6362557: 1423-1604 [-]

Mature pab-miR11499b-5p

• Accession: MIMAT0045057
• Description: Picea abies pab-miR11499b-5p mature miRNA
• Sequence: 18 - UGAAAGGCCACAGUAGGUGAUG - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR11499b-3p

• Accession: MIMAT0057727
• Description: Picea abies pab-miR11499b-3p mature miRNA
• Sequence: 126 - GGCAAUUUGUCCUUGGCUACA - 146
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918