Stem-loop pab-MIR11501

Accession

MI0036961

Description

Picea abies pab-MIR11501 precursor miRNA

Sequence

agaauaagucagcgagagaugagUAUUGGAAAGGCGAGUUGGCUuugcaagacguaaagcgaaccaaaaaaugauucaguucuucuggacaaagugauaauauggauaauaacaagaauguucaaugggaacaguguugcuguuauccauuuuaucauucuuguaaguccaugagaucacugucaugagccaaagugaauccuuuuuuugguuagcuuugcgucuaacaaaucccacucgucauuccaauacuuaccucucccugaauuauucu
(((((((.((((.(((((.((((((((((((.(((((((.((.((((..(((((((((((.((((((((((.((((((.((.(((..((((..(((((..(((((((....(((((((((...((((((((((((...)))))).))))))....)))))))))..)))))))..)))))))))..)))...)).))))))..)))))))))).)))))))))))..)))).)).))))))).)))))))))))).))))).)))).)))))))

Structure

       g    c     a            A       U  C    ca           g          -u      g  --c   ug    aa     aa       aaua         -uuc      -      g 
agaauaa ucag gagag ugagUAUUGGAA GGCGAGU GG Uuug  agacguaaagc aaccaaaaaa  gauuca uu   uuc  gaca  gugau  uauggau    acaagaaug    aauggg aacagu  
||||||| |||| ||||| |||||||||||| ||||||| || ||||  ||||||||||| ||||||||||  |||||| ||   |||  ||||  |||||  |||||||    |||||||||    |||||| |||||| u
ucuuauu aguc cucuc auucauaaccuu cugcuca cc aaac  ucugcguuucg uugguuuuuu  cuaagu aa   gag  cugu  cacua  guaccug    uguucuuac    uuaccu uugucg  
       a    c     c            a       c  u    aa           a          uc      g  acc   ua    --     ga       --aa         uauu      a      u 

Annotation confidence Not enough data

Genome context

MA_836587: 1194-1467 [-]

Mature pab-miR11501

• Accession: MIMAT0045059
• Description: Picea abies pab-miR11501 mature miRNA
• Sequence: 24 - UAUUGGAAAGGCGAGUUGGCU - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918