Stem-loop pab-MIR11502

Accession

MI0036962

Description

Picea abies pab-MIR11502 precursor miRNA

Sequence

955 reads, 116.0 reads per million, 42 experiments

guaagacuuccugacgaaccacuUAUUGGAUUGAGAAUAGAUCuugugcauaaagauucacugcucucuccaaauauuauauacacugagcguuugaagcugagccugaaguaucgauuucuguaacuucaucaaccaauuuaacaguauuuagaacucaacaucugugcuuugaaucuauauguacaagauuuauucUCAAUCCAAUAAGGGGUUCCacagacagugcuau
...(((((..(((..(((((.(((((((((((((((((((((((((((((((.(((((((..((.....................((.(((.......))).))..((((((..((.....))..))))))............((((.................))))))..))))))).))))))))))))))))))))))))))))))).)))))..)))..))).))..

Structure

gua  -   uc   ac     a                               a       cu  ucucuccaaauauuauauacacugagcguuugaagcugagcc      au  a 
   ag acu  cug  gaacc cuUAUUGGAUUGAGAAUAGAUCuugugcaua agauuca  gc                                          ugaagu  cg u
   || |||  |||  ||||| ||||||||||||||||||||||||||||||| |||||||  ||                                          ||||||  || u
   uc uga  gac  CUUGG GAAUAACCUAACUcuuauuuagaacauguau ucuaagu  cg                                          acuuca  gu u
-ua  g   ca   aC     G                               a       uu  -----ugucuacaacucaagauuuaugacaauuuaaccaacu      au  c 

Annotation confidence Low

Genome context

MA_139935: 6330-6561 [-]

Mature pab-miR11502-5p

• Accession: MIMAT0045060
• Description: Picea abies pab-miR11502-5p mature miRNA
• Sequence: 24 - UAUUGGAUUGAGAAUAGAUC - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR11502-3p

• Accession: MIMAT0057729
• Description: Picea abies pab-miR11502-3p mature miRNA
• Sequence: 199 - UCAAUCCAAUAAGGGGUUCC - 218
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918