Stem-loop pab-MIR11504

Accession

MI0036964

Description

Picea abies pab-MIR11504 precursor miRNA

Sequence

36567 reads, 1487.0 reads per million, 102 experiments

gauaauggcaccuccacuUCAACAUGAGGAGGAGCUCAUUcauucaaaaaugaggucuguaUGAGCUCUCCUCAUAUUGAAGucgggguuucucauuauu
((((((((.(((((.(((((((.((((((((.(((((((.((((((....))))...)).))))))))))))))).))))))).)))))...))))))))

Structure

        --c     c       C        G       U  ---    a 
gauaaugg   accuc acuUCAA AUGAGGAG AGCUCAU ca   uuca a
||||||||   ||||| ||||||| |||||||| ||||||| ||   ||||  
uuauuacu   ugggg uGAAGUU UACUCCUC UCGAGUa gu   gagu a
        cuu     c       A        -       u  cug    a 

Annotation confidence Medium

Genome context

MA_10428801: 14032-14131 [-]

Mature pab-miR11504-5p

• Accession: MIMAT0045062
• Description: Picea abies pab-miR11504-5p mature miRNA
• Sequence: 19 - UCAACAUGAGGAGGAGCUCAUU - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR11504-3p

• Accession: MIMAT0057731
• Description: Picea abies pab-miR11504-3p mature miRNA
• Sequence: 62 - UGAGCUCUCCUCAUAUUGAAG - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918