Stem-loop pab-MIR11505

Accession

MI0036965

Description

Picea abies pab-MIR11505 precursor miRNA

Sequence

1971 reads, 126.0 reads per million, 89 experiments

uuAGAACCACUGUUGAGUCCAGAcacacuuuggcugcauccugugugucuugaagguagucacgucuuguagcUCAAGUGUUUCUGGACUCACCagugguccuaa
.(((.(((((((.((((((((((.((((((.(((((((.....((((.((.......)).))))...))))))).)))))).)))))))))).))))))).))).

Structure

u   A       U          c      u       uccug    u  ug 
 uAG ACCACUG UGAGUCCAGA acacuu ggcugca     ugug cu  a
 ||| ||||||| |||||||||| |||||| |||||||     |||| ||  a
 auc uggugaC ACUCAGGUCU UGUGAA Ucgaugu     gcac ga  g
a   c       C          U      C       --ucu    u  ug 

Annotation confidence Medium

Genome context

MA_8539612: 1832-1936 [+]

Mature pab-miR11505-5p

• Accession: MIMAT0057732
• Description: Picea abies pab-miR11505-5p mature miRNA
• Sequence: 3 - AGAACCACUGUUGAGUCCAGA - 23
• Evidence: experimental ; unknown

Mature pab-miR11505-3p

• Accession: MIMAT0045063
• Description: Picea abies pab-miR11505-3p mature miRNA
• Sequence: 74 - UCAAGUGUUUCUGGACUCACC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918