Stem-loop pab-MIR11506

Accession

MI0036966

Description

Picea abies pab-MIR11506 precursor miRNA

Sequence

augagcgcaagagauggauuauuccguguuuugugauauauacagcuuuuucaguuuuaucuacuccuaccccuuucacaaauacucucaaauugcagaguuuaaaugggauucacauaugucugaucugccauuccuauggguucucugcggugaagaaaggcguggaaugaauggaggcuaaaaaauaUCACAAAACACCGGAAUAAUCUuucucuuaagcccau
(((.((..((((((.((((((((((((((((((((((((....(((((((...((((..(((((.(((.....((((((..............(((((((.....((((((....((.((.....)).))....)))))).....)))))))))))))..))).)))))..))))))))))).....))))))))))))).))))))))))).))))))..)).)))

Structure

   a  gc      u           -             -auac       uca    ua     u   acccc      aaauacucucaaau       uuuaa      uuca  u  g 
aug gc  aagaga ggauuauuccg uguuuugugauau     agcuuuu   guuu  ucuac ccu     uuucac              ugcagag     auggga    ca au u
||| ||  |||||| ||||||||||| |||||||||||||     |||||||   ||||  ||||| |||     ||||||              |||||||     ||||||    || || c
uac cg  uucucu UCUAAUAAGGC ACAAAACACUaua     ucggagg   uaag  aggug gga     gaagug              gcgucuc     uauccu    gu ua u
   c  aa      u           C             aaaaa       ---    ua     c   ---aa      --------------       uuggg      uacc  c  g 

Annotation confidence Not enough data

Genome context

MA_9504: 6934-7160 [-]

Mature pab-miR11506

• Accession: MIMAT0045064
• Description: Picea abies pab-miR11506 mature miRNA
• Sequence: 191 - UCACAAAACACCGGAAUAAUCU - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918