Stem-loop pab-MIR11507

Accession

MI0036967

Description

Picea abies pab-MIR11507 precursor miRNA

Sequence

11135 reads, 361.0 reads per million, 88 experiments

uucuuuucucucguucacucauaUCACGAUGAUCAGUAAUCACUGgugauccuucugagucuauggagauuggaguguggccaugucuucugggguuacgccgauucaguuucacaaggggacagcuacaccccaaucggccauggauucuguaaggaucaguggcgcugaugagggaucugaacgccaacagagguugccguaauugUGAUAUGAGAUAGCGAGGGGCaaaaagga
(((((((((((((((..(((((((((((((...(.((((((.(((.(((((((((.((((((((((.((((((.(((((((..((((((((...(..((.........))..)...))))))))))))))).))))))..)))))))))).).)))))))).(((((..(((.....)))....))))).))).)))))).)..)))))))))))))..)))))))))...))))))

Structure

      ---         ca             GAU A      A   ----------------------------g        - u          -a      a       ca        ggg uu  gcc 
uucuuu   ucucucguu  cucauaUCACGAU   C GUAAUC CUG                             ugauccuu c gagucuaugg  gauugg guguggc  ugucuucu   g  ac   g
||||||   |||||||||  |||||||||||||   | |||||| |||                             |||||||| | ||||||||||  |||||| |||||||  ||||||||   |  ||   a
aggaaa   GGGGAGCGA  GAGUAUAGUguua   g cguugg gac                             acuaggaa g cuuagguacc  cuaacc cacaucg  acagggga   c  ug   u
      aaC         UA             -au c      a   aaccgcaagucuagggaguagucgcggug        u u          gg      c       --        aca uu  acu 

Annotation confidence Low

Genome context

MA_7423936: 800-1036 [-]

Mature pab-miR11507-5p

• Accession: MIMAT0045065
• Description: Picea abies pab-miR11507-5p mature miRNA
• Sequence: 24 - UCACGAUGAUCAGUAAUCACUG - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR11507-3p

• Accession: MIMAT0057734
• Description: Picea abies pab-miR11507-3p mature miRNA
• Sequence: 209 - UGAUAUGAGAUAGCGAGGGGC - 229
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918