Stem-loop pab-MIR3693b

Accession

MI0036969

Description

Picea abies pab-MIR3693b precursor miRNA

Sequence

5644 reads, 262.0 reads per million, 85 experiments

ucgccuuucacuaagguacUCAGGAGCUGCUCGUAGGUGAgggaugcacagaggccuuacucaaacacuugagcagaucuguuuguugaaaacaagcgcucaaauggagcaaacuuccAUCUAUAAGCAGCUCAUGAGuaccuucugaaggacguga
((((((((((..((((((((((.((((((((.((((((((((..(((...(((......)))...((.((((((......(((((((...))))))))))))).))..)))..))).))))))).)))))))).)))))))))).))))))..))))

Structure

    --      cu          G        C       -   ga   acagaggccuuacucaaa  c      agaucu       g 
ucgc  cuuuca  aagguacUCA GAGCUGCU GUAGGUG Agg  ugc                  ca uugagc      guuuguu  
||||  ||||||  |||||||||| |||||||| ||||||| |||  |||                  || ||||||      ||||||| a
agug  ggaagu  uuccauGAGU CUCGACGA UAUCUAc uuc  acg                  gu aacucg      cgaacaa  
    ca      -c          A        A       c   aa   ----------------ag  a      ------       a 

Annotation confidence High

Genome context

MA_10139353: 1491-1647 [+]

Mature pab-miR3693b-5p

• Accession: MIMAT0045067
• Description: Picea abies pab-miR3693b-5p mature miRNA
• Sequence: 20 - UCAGGAGCUGCUCGUAGGUGA - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR3693b-3p

• Accession: MIMAT0057736
• Description: Picea abies pab-miR3693b-3p mature miRNA
• Sequence: 119 - AUCUAUAAGCAGCUCAUGAG - 138
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918