Stem-loop pab-MIR3693c

Accession

MI0036970

Description

Picea abies pab-MIR3693c precursor miRNA

Sequence

5117 reads, 249.0 reads per million, 87 experiments

cgccuuucacgaagguacUCAGGAGCUGCUCGUAGGUGAgggaugcacagaggccuuacucaaacacuugagcagaucuguuuguugaaaacacaagcgcucaaauggagcaaacuuccAUCUAUGAGCAGCUCAUGAGCaccuucugaaggacg
((.((((((.((((((.((((.(((((((((((((((((((..(((...(((......)))...((.((((((.....(((((.....))))).....)))))).))..)))..))).)))))))))))))))).)))).)))))))))))).))

Structure

  c      c      a    G                -   ga   acagaggccuuacucaaa  c      agauc     g 
cg cuuuca gaaggu cUCA GAGCUGCUCGUAGGUG Agg  ugc                  ca uugagc     uguuu u
|| |||||| |||||| |||| |||||||||||||||| |||  |||                  || ||||||     ||||| u
gc ggaagu cuucca GAGU CUCGACGAGUAUCUAc uuc  acg                  gu aacucg     acaaa g
  a      -      C    A                c   aa   ----------------ag  a      cgaac     a 

Annotation confidence High

Genome context

MA_7318333: 163-317 [-]

Mature pab-miR3693c-5p

• Accession: MIMAT0045068
• Description: Picea abies pab-miR3693c-5p mature miRNA
• Sequence: 19 - UCAGGAGCUGCUCGUAGGUGA - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR3693c-3p

• Accession: MIMAT0057737
• Description: Picea abies pab-miR3693c-3p mature miRNA
• Sequence: 120 - AUCUAUGAGCAGCUCAUGAGC - 140
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918