Stem-loop pab-MIR11498b

Accession

MI0036971

Description

Picea abies pab-MIR11498b precursor miRNA

Sequence

aacauguuucuccucaaugguaucaugucauauuacaucacgaauacaauugcuggaaauagaacaaauuuggcagcaagcagagugucaugacauuauuuugaagcuucaguaguuucugguguuuaaaaaccuggucgucaaaaaucaaucaauccaccacucucauaagaucauagcccacccaucgccacuuuuggggaaaaccaucguugucuaucuaccagauuguaUCAGUGAUGUAGUAUGACAUGaucccaucgcuuggagagugcaguu
(((.(((((((((.(.((((.((((((((((((((((((((..(((((((..(((((.(((((.(((...(((..((.(.(((.((.....(((((((....((((((.....))))))))))))).....))))).).))......................(((....)))..........((((..........)))).....)))...)))))))).).)))))))))))..)))))))))))))))))))).)))).)...)))))).))))))

Structure

   a   -      --u a    u                    ga       ug    - a     a   auu   ---------------------------------------------------------------ca  a g   a  gucau       uuuu      u 
aac ugu uucucc   c augg aucaugucauauuacaucac  auacaau  cugg a auaga caa   ugg                                                                 gc a cag gu     gacauua    gaagcu c
||| ||| ||||||   | |||| ||||||||||||||||||||  |||||||  |||| | ||||| |||   |||                                                                 || | ||| ||     |||||||    |||||| a
uug acg gagagg   g uacc uaGUACAGUAUGAUGUAGUG  Uauguua  gacc u uaucu guu   acc                                                                 ug u guc ca     uuguggu    cuuuga g
   -   u      uuc c    c                    AC       --    a c     -   gcu   aaaagggguuuucaccgcuacccacccgauacuagaauacucucaccaccuaacuaacuaaaaac  c g   -  aaaau       ----      u 

Annotation confidence Not enough data

Genome context

MA_463206: 3992-4270 [+]

Mature pab-miR11498b

• Accession: MIMAT0045069
• Description: Picea abies pab-miR11498b mature miRNA
• Sequence: 234 - UCAGUGAUGUAGUAUGACAUG - 254
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918