Stem-loop pab-MIR11509

Accession

MI0036973

Description

Picea abies pab-MIR11509 precursor miRNA

Sequence

193 reads, 19.0 reads per million, 57 experiments

guccauucuucugaaagcuauguucaGGAUAUCUGCAUUGCUCAUUAacaugucagcguuuuagaccagacgaaacauugacacauUCAUGAGCAUUGUGGAUGAUCuugaaaguagcuuugagaaugguc
..((((((((...((((((((.(((((((((((((((.(((((((.((..((((((.(((((.........))))).))))))..)).))))))).))))))).)))))))).))))))))))))))))..

Structure

gu        cug        g        -       U       U  ca      c     aga 
  ccauucuu   aaagcuau uucaGGAU AUCUGCA UGCUCAU Aa  ugucag guuuu   c
  ||||||||   |||||||| |||||||| ||||||| ||||||| ||  |||||| |||||   c
  gguaagag   uuucgaug aaguuCUA UAGGUGU ACGAGUA Uu  acaguu caaag   a
cu        ---        a        G       U       C  ac      a     cag 

Annotation confidence Medium

Genome context

MA_48902: 3978-4108 [+]

Mature pab-miR11509-5p

• Accession: MIMAT0057740
• Description: Picea abies pab-miR11509-5p mature miRNA
• Sequence: 27 - GGAUAUCUGCAUUGCUCAUUA - 47
• Evidence: experimental ; unknown

Mature pab-miR11509-3p

• Accession: MIMAT0045071
• Description: Picea abies pab-miR11509-3p mature miRNA
• Sequence: 87 - UCAUGAGCAUUGUGGAUGAUC - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918