Stem-loop pab-MIR11510

Accession

MI0036974

Description

Picea abies pab-MIR11510 precursor miRNA

Sequence

3721 reads, 405.0 reads per million, 96 experiments

cugccgaguuguguuuuuauuuUCAUUGUCGCAGUUCUCGUAGUuucuauaacaauuuacagaaucaaaucguuguagaaauUGCGAGAACUGCUACAUAGAAAauuaaagcacagaacuuuuuaaggag
((...((((((((((((.((((((..(((.(((((((((((((((((((((((.((((........)))).))))))))))))))))))))))).)))..)))))).))))))))..))))....))...

Structure

---  -gcc    --        u      AU   C                       a    aca 
   cu    gagu  uguguuuu auuuUC  UGU GCAGUUCUCGUAGUuucuauaac auuu   g
   ||    ||||  |||||||| ||||||  ||| ||||||||||||||||||||||| ||||    
   ga    uuca  acacgaaa uaAAAG  ACA CGUCAAGAGCGUuaaagauguug uaaa   a
gag  auuu    ag        u      AU   U                       c    cua 

Annotation confidence Medium

Genome context

MA_7766343: 1258-1387 [+]

Mature pab-miR11510-5p

• Accession: MIMAT0045072
• Description: Picea abies pab-miR11510-5p mature miRNA
• Sequence: 23 - UCAUUGUCGCAGUUCUCGUAGU - 44
• Evidence: experimental ; Illumina [1]

Mature pab-miR11510-3p

• Accession: MIMAT0057741
• Description: Picea abies pab-miR11510-3p mature miRNA
• Sequence: 83 - UGCGAGAACUGCUACAUAGAAA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918