Stem-loop pab-MIR11513

Accession

MI0036978

Description

Picea abies pab-MIR11513 precursor miRNA

Sequence

861 reads, 122.0 reads per million, 52 experiments

uuaauaagcaccuggcuacagagcaUUAAAUGCUUUGCAUGUCGGGGugugcauuguuguaucauuugauccaauagugcacaccUCCGCAUGUAGAGCAUUAAAUGcucuguaucugggugcuuauuga
(((((((((((((((.(((((((((((.(((((((((((((.(((((((((((((((((.(((....))).)))))))))))))).)))))))))))))))).))))))))))).)))))))))))))))

Structure

               c           A             U   -              u   a 
uuaauaagcaccugg uacagagcaUU AAUGCUUUGCAUG CGG GGugugcauuguug auc u
||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||| |||  
aguuauucguggguc augucucGUAA UUACGAGAUGUAC GCC ccacacgugauaac uag u
               u           A             -   U              c   u 

Annotation confidence Medium

Genome context

MA_2703: 14438-14567 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11513

Mature pab-miR11513-5p

• Accession: MIMAT0045076
• Description: Picea abies pab-miR11513-5p mature miRNA
• Sequence: 26 - UUAAAUGCUUUGCAUGUCGGGG - 47
• Evidence: experimental ; Illumina [1]

Mature pab-miR11513-3p

• Accession: MIMAT0057745
• Description: Picea abies pab-miR11513-3p mature miRNA
• Sequence: 86 - UCCGCAUGUAGAGCAUUAAAUG - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918