miRBase entry: pab-MIR11481b

Stem-loop pab-MIR11481b

Accession

MI0036979

Description

Picea abies pab-MIR11481b precursor miRNA

Sequence

accgugcaaucaucugaUCCGGUGAAGAGUAGCCCGUCagcggugagcucggaucgucuagaugcacuuggacucccacaguucgcacaccuucacgcuagucggaggaacugugggaacugucgagacgaugggagcucacagcgaggccgucgauaccgucgucguagggcacgacgggcuacucuucacuggaucgaaugacaacacggu
((((((...((((.((((((((((((((((((((((((.((.((((((((..(((((((.(((......((..((((((((((......(((((((....)).))))))))))))))).))))).)))))))..)))))))).))...(((.(((((......)))).).)))..)))))))))))))))))))))))).))))...))))))

Structure

      caa    c                        -----------------------------a  g        gg       a   gcacuu  ac          cgcaca     -  g 
accgug   ucau ugaUCCGGUGAAGAGUAGCCCGUC                              gc gugagcuc  aucgucu gau      gg  ucccacaguu      ccuuc ac c
||||||   |||| ||||||||||||||||||||||||                              || ||||||||  ||||||| |||      ||  ||||||||||      ||||| ||  
uggcac   agua gcuaggucacuucucaucgggcag                              cg cacucgag  uagcaga cug      uc  agggugucaa      ggagg ug u
      aac    a                        cacgggaugcugcugccauagcugccggag  a        gg       g   ------  -a          ------     c  a

Annotation confidence Not enough data

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Genome context

MA_10427929: 1261-1473 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11481b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pab-miR11481b

Accession	MIMAT0045077
Description	Picea abies pab-miR11481b mature miRNA
Sequence	18 - UCCGGUGAAGAGUAGCCCGUC - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 26318183
Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
"Xia R, Xu J, Arikit S, Meyers BC"
"Mol Biol Evol (2015) 32:2905-2918