Stem-loop pab-MIR11514

Accession

MI0036981

Description

Picea abies pab-MIR11514 precursor miRNA

Sequence

3961 reads, 165.0 reads per million, 85 experiments

uacuguuUUGGAAGGUUUUGAGGGCCGaggaguccagauuuuggugcaggaccggccucuaucaggcgagcauuuucaacaauccagcugcgcucucaacaauauggacUCCUCUACCGUCAAAAUCUUCcaaaauggua
(((((((((((((((((((((.((..((((((((((.((((((((((((.....((((.....))))....................))))))...))).))).))))))))))..)).)))))))))))))))))))))

Structure

                     G  CC          g   -   ---      ---------------gaccg    c 
uacuguuUUGGAAGGUUUUGA GG  Gaggagucca auu uug   gugcag                    gccu u
||||||||||||||||||||| ||  |||||||||| ||| |||   ||||||                    |||| a
augguaaaacCUUCUAAAACU CC  CUCCUcaggu uaa aac   cgcguc                    cgga u
                     G  AU          a   c   ucu      gaccuaacaacuuuuacgag    c 

Annotation confidence Medium

Genome context

MA_10436022: 8271-8410 [-]

Mature pab-miR11514-5p

• Accession: MIMAT0057746
• Description: Picea abies pab-miR11514-5p mature miRNA
• Sequence: 8 - UUGGAAGGUUUUGAGGGCCG - 27
• Evidence: experimental ; unknown

Mature pab-miR11514-3p

• Accession: MIMAT0045079
• Description: Picea abies pab-miR11514-3p mature miRNA
• Sequence: 110 - UCCUCUACCGUCAAAAUCUUC - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918