Stem-loop pab-MIR11407b

Accession

MI0036982

Description

Picea abies pab-MIR11407b precursor miRNA

Sequence

guuuaugcuuucgUCGAAAACUCUGCGAGCGUCUacuguuuaaucuauggcggacaccguuuuaaguaccaaagccgggaucacggcaugaaaauguaugugcacauguauuccgguggaugcucgcuggguuuuggacgaaaugucuaaac
(((((.(((((((((.(((((((.((((((((((((((...(((.(((((((.(...((((((..........((((......))))...))))))..).))).)))).))).)))))))))))))).))))))).))))))).)).)))))

Structure

     u  -       G       U              uuu   c    -   g cac      aaguaccaaa    gg 
guuua gc uuucgUC AAAACUC GCGAGCGUCUacug   aau uaug gcg a   cguuuu          gccg  a
||||| || ||||||| ||||||| ||||||||||||||   ||| |||| ||| |   ||||||          ||||   
caaau ug aaagcag uuuuggg cgcucguagguggc   uua guac cgu u   guaaaa          cggc  u
     c  u       g       u              --c   u    a   g -au      -------gua    ac 

Annotation confidence Not enough data

Genome context

MA_8764075: 1499-1650 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11407b

Mature pab-miR11407b

• Accession: MIMAT0045080
• Description: Picea abies pab-miR11407b mature miRNA
• Sequence: 14 - UCGAAAACUCUGCGAGCGUCU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918