Stem-loop pab-MIR11516

Accession

MI0036984

Description

Picea abies pab-MIR11516 precursor miRNA

Sequence

2282 reads, 97.0 reads per million, 79 experiments

uacaugCCUUUCUGACAAACUUCAGCUgaaagaaauuacaggaggugaaacuugacuccucagauuggagcuuccguccaucuggguauuuucuuaacuagauaugccuccuccuaucccuuuauuugucucuuagcaugaucuUCGAAGUCCGUAAGAGAAGCCgcac
.....((.(((((.((..(((((.(((((.(((......((((((...............(((((.(((.......))))))))(((((..(((.....))).))))).)))))).............))).))))).........)))))..)).))))).)).....

Structure

uacau  C     G  AA     --------A     a   -------aauuac      ugaaacuugacuccucagauuggagcuuccguccaucug     uu   u 
     gC UUUCU AC  ACUUC         GCUga aga             aggagg                                       gguau  ucu a
     || ||||| ||  |||||         ||||| |||             ||||||                                       |||||  ||| a
     CG AGAGA UG  UGAAG         cgauu ucu             uccucc                                       ccgua  aga c
cacgC  A     A  CC     CUucuagua     c   guuuauuucccua      --------------------------------------u     -u   u 

Annotation confidence High

Genome context

MA_17259: 28910-29078 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11516

Mature pab-miR11516-5p

• Accession: MIMAT0057749
• Description: Picea abies pab-miR11516-5p mature miRNA
• Sequence: 7 - CCUUUCUGACAAACUUCAGCU - 27
• Evidence: experimental ; unknown

Mature pab-miR11516-3p

• Accession: MIMAT0045082
• Description: Picea abies pab-miR11516-3p mature miRNA
• Sequence: 145 - UCGAAGUCCGUAAGAGAAGCC - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918