Stem-loop pab-MIR11517

Accession

MI0036986

Description

Picea abies pab-MIR11517 precursor miRNA

Sequence

19962 reads, 866.0 reads per million, 102 experiments

aaugaaguuaaucUUGUCGCCAAAACUCAACAUCaaaauuuuguaaacaaacaccguuucugagccuucugcacuaguuuaaccagauuUCGAUGUUGAAUUUUGGCAACaagguuaacuucauu
(((((((((((((((((.(((((((.((((((((.((((((.((((((............................)))).)).)))))).)))))))).))))))).)))))))))))))))))

Structure

                 C       C        a      u  -    aaacaccguuucu 
aaugaaguuaaucUUGU GCCAAAA UCAACAUC aaauuu gu aaac             g
||||||||||||||||| ||||||| |||||||| |||||| || ||||              
uuacuucaauuggaaCA CGGUUUU AGUUGUAG Uuuaga ca uuug             a
                 A       A        C      c  a    aucacgucuuccg 

Annotation confidence Low

Genome context

MA_10426348: 4468-4592 [+]

Mature pab-miR11517-5p

• Accession: MIMAT0057750
• Description: Picea abies pab-miR11517-5p mature miRNA
• Sequence: 14 - UUGUCGCCAAAACUCAACAUC - 34
• Evidence: experimental ; unknown

Mature pab-miR11517-3p

• Accession: MIMAT0045084
• Description: Picea abies pab-miR11517-3p mature miRNA
• Sequence: 90 - UCGAUGUUGAAUUUUGGCAAC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918