Stem-loop pab-MIR11518

Accession

MI0036988

Description

Picea abies pab-MIR11518 precursor miRNA

Sequence

20058 reads, 576.0 reads per million, 75 experiments

caauuugguucggcuguuggggUCUCGAUUCGAAAGCCCUACGagcgcacugguauauaaguacaugguccauggauaccuccauaaauuuuaauggauaucuuaagaacugucccaccucuuucucagcaaauagaaauuuaugaagguaaccauugaccagguacucauauaccagugcgcuugUCGGGCUUUCGAAUCAAUACCccaacaaagugggaacaauug
....(((.(((.(((((((((((...(((((((((((((.((((((((((((((((((.(((((.(((((.((((.(((((.((((((((((.((.........((((..((...))..)))).........)).)))))))))).))))).)))).))))).))))).)))))))))))))))))).)))))))))))))...))))))))..))).))).)))...

Structure

caau   g   g   --        CUC             U                  a     a     c    a     c          a  ggauaucuu    ac  u 
    uug uuc gcu  guuggggU   GAUUCGAAAGCCC ACGagcgcacugguauau aguac ugguc augg uaccu cauaaauuuu au         aaga  ug  
    ||| ||| |||  ||||||||   ||||||||||||| |||||||||||||||||| ||||| ||||| |||| ||||| |||||||||| ||         ||||  || c
    aac agg uga  caaccCCA   CUAAGCUUUCGGG Uguucgcgugaccauaua ucaug accag uacc augga guauuuaaag ua         uucu  ac  
-guu   a   g   aa        UAA             C                  c     g     u    a     a          a  aacgacucu    cc  c 

Annotation confidence High

Genome context

MA_68177: 1788-2015 [-]

Mature pab-miR11518-5p

• Accession: MIMAT0057751
• Description: Picea abies pab-miR11518-5p mature miRNA
• Sequence: 23 - UCUCGAUUCGAAAGCCCUACG - 43
• Evidence: experimental ; unknown

Mature pab-miR11518-3p

• Accession: MIMAT0045086
• Description: Picea abies pab-miR11518-3p mature miRNA
• Sequence: 187 - UCGGGCUUUCGAAUCAAUACC - 207
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918