miRBase entry: pab-MIR11519

Stem-loop pab-MIR11519


Accession
MI0036989
Description
Picea abies pab-MIR11519 precursor miRNA


Sequence

46967 reads, 1032.0 reads per million, 94 experiments
gucaaaucucccauuauuccuuGUUUUACGAGGUCGAGCAUGGugaucucuaaggcucgagcaaugauuaauuugaucccuguguccagcucauguguucacugaaaaucaccagacucaaccUCGUAAAACACAGGAAUGAUGGgagacuuguac
(((((.((((((((((((((((((((((((((((.(((..(((((((.......(((.(((((..(((((...)))))..))).)).)))(((((....)).)))..)))))))..))).))))))))))))).))))))))))))))).))).))

Structure
  -   a               -             C   CA       ----------cucuaag   c  -   au     a 
gu caa ucucccauuauuccu uGUUUUACGAGGU GAG  UGGugau                 gcu ga gca  gauua  
|| ||| ||||||||||||||| ||||||||||||| |||  |||||||                 ||| || |||  ||||| u
ca guu agagGGUAGUAAGGA ACAAAAUGCUcca cuc  accacua                 cga cu ugu  cuagu  
  u   c               C             a   ag       aaagucacuuguguacu   c  g   cc     u 


Annotation confidence Low
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Genome context
MA_258456: 1682-1837 [+]

Database links

Mature pab-miR11519-5p

Accession MIMAT0057752
Description Picea abies pab-miR11519-5p mature miRNA
Sequence 23 - GUUUUACGAGGUCGAGCAUGG - 43
Evidence experimental
unknown

Mature pab-miR11519-3p

Accession MIMAT0045087
Description Picea abies pab-miR11519-3p mature miRNA
Sequence 124 - UCGUAAAACACAGGAAUGAUGG - 145
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918