Stem-loop pab-MIR11520

Accession

MI0036990

Description

Picea abies pab-MIR11520 precursor miRNA

Sequence

913 reads, 81.0 reads per million, 54 experiments

agaggaaagcaacacaauuacuguuCAAGGCAGGAAGGAUUCCAACcaaaacacggguaaaauuacagcccguguuuUCGUUGGGAUCUUUUCUGCCUugagcaguaaaacugugcuccuuu
.(((((..(((.((...(((((((((((((((((((((((((((((.(((((((((((.........))))))))))).)))))))))))))))))))))))))))))...)))))))))).

Structure

a     aa   a  caa                             c           aaa 
 gagga  gca ca   uuacuguuCAAGGCAGGAAGGAUUCCAAC aaaacacgggu   a
 |||||  ||| ||   ||||||||||||||||||||||||||||| |||||||||||   u
 uuccu  cgu gu   aaugacgaguUCCGUCUUUUCUAGGGUUG Uuuugugcccg   u
u     --   -  caa                             C           aca 

Annotation confidence Medium

Genome context

MA_131348: 12112-12233 [+]

Mature pab-miR11520-5p

• Accession: MIMAT0057753
• Description: Picea abies pab-miR11520-5p mature miRNA
• Sequence: 26 - CAAGGCAGGAAGGAUUCCAAC - 46
• Evidence: experimental ; unknown

Mature pab-miR11520-3p

• Accession: MIMAT0045088
• Description: Picea abies pab-miR11520-3p mature miRNA
• Sequence: 78 - UCGUUGGGAUCUUUUCUGCCU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918