Stem-loop pab-MIR11521

Accession

MI0036993

Description

Picea abies pab-MIR11521 precursor miRNA

Sequence

uguuucacgugagagaagcugcaUCUAGGGGCUCUUUAACAUCCuugcaaagugaacuuuaugaggacuugacuggacggaagcagauaauggauaacauugauacagggauaucgauguuaaaaggucuugucccgccuucucaaguucucauaguuuuagaugauguggauucugaugagcagcugcgggcauuauuuucaccguugaagga
..(((((((((((((.((.(((.(((((..((((.(((..((((...((....(((((..((((((((((((..((.(((.(..((((......(((((((((((......)))))))))))....))))..).)))))...)))))))))))))))))....))....))))..))).))))..))).))))))).)))))).)).)))))..

Structure

ug     -  -      a  c   a  -   GG    U   AC    -uug  aagu     uu            -cu  a   a gc    aaugga           ca 
  uuuca cg ugagag ag ugc UC UAG  GCUC UUA  AUCC    ca    gaacu  augaggacuuga   gg cgg a  agau      uaacauugaua  g
  ||||| || |||||| || ||| || |||  |||| |||  ||||    ||    |||||  ||||||||||||   || ||| |  ||||      |||||||||||   
  gaagu gc acuuuu uu acg gg guc  cgag agu  uagg    gu    uuuga  uacucuugaacu   cc gcc u  ucug      auuguagcuau  g
ag     u  c      a  -   -  c   ga    u   cu    ugua  agau     --            cuu  -   c gu    --gaaa           ag 

Annotation confidence Not enough data

Genome context

MA_10431676: 28668-28881 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11521

Mature pab-miR11521

• Accession: MIMAT0045091
• Description: Picea abies pab-miR11521 mature miRNA
• Sequence: 24 - UCUAGGGGCUCUUUAACAUCC - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918