miRBase entry: pab-MIR11523b

Stem-loop pab-MIR11523b


Accession
MI0036996
Description
Picea abies pab-MIR11523b precursor miRNA


Sequence

2505 reads, 141.0 reads per million, 95 experiments
ccagcuuugguagagagcuucaucuUCUGAGCAGAUUCAAUGCCCGAacccuacauaacaggagucgucgguaugacaccauuuuuguagggucAGGUAUUCAACUGCUCAGAAGuugaaguuagacuuuacuugcagggugg
(((.(((.((((((((((((((.(((((((((((.((.((((((.((.(((((((.((..((.(((((....))))).))..)).))))))))).)))))).))))))))))))).)))))))...)))))))...))).)))

Structure
   g   --u       ---       u           A  C      C  a       u  ca  a     c 
cca cuu   gguagag   agcuuca cuUCUGAGCAG UU AAUGCC GA cccuaca aa  gg gucgu g
||| |||   |||||||   ||||||| ||||||||||| || |||||| || ||||||| ||  || |||||  
ggu gga   ucauuuc   uugaagu GAAGACUCGUC AA UUAUGG cu gggaugu uu  cc cagua g
   g   cgu       aga       u           -  C      A  -       u  ua  a     u 


Annotation confidence High
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Genome context
MA_310699: 6361-6503 [-]

Database links

Mature pab-miR11523b-5p

Accession MIMAT0045094
Description Picea abies pab-miR11523b-5p mature miRNA
Sequence 26 - UCUGAGCAGAUUCAAUGCCCGA - 47
Evidence experimental
Illumina [1]

Mature pab-miR11523b-3p

Accession MIMAT0057758
Description Picea abies pab-miR11523b-3p mature miRNA
Sequence 95 - AGGUAUUCAACUGCUCAGAAG - 115
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918