Stem-loop pab-MIR11523c

Accession

MI0036997

Description

Picea abies pab-MIR11523c precursor miRNA

Sequence

465 reads, 90.0 reads per million, 78 experiments

agcucuguaaugaguuucaucuUCUGAGCAGAUUUAAUGCCCGAccccuacacagcaggauuuguuggaacaacaccauucuuguaggguugggggcuuAAAUUGGUCAAGAAGUUGAAGUuggacuuuguuugcaggguu
.(((((((((.((((((((.(((((((.(((.((((((.((((((((.((((....(((((.(((((...)))))..))))))))))))))))).).)))))))).)).))))).))).....)))))...))))))))).

Structure

a         --u     -----   u     -  G   A     - G        c    cagc     -u     g 
 gcucuguaa   gaguu     uca cuUCU GA CAG UUUAA U CCCGAccc uaca    aggau  uguug  
 |||||||||   |||||     ||| ||||| || ||| ||||| | |||||||| ||||    |||||  ||||| a
 ugggacguu   uucag     AGU GAAGA CU GUU AAAuu g ggguuggg augu    ucuua  acaac  
u         ugu     guUGA   U     A  G   -     c g        -    ----     cc     a 

Annotation confidence Medium

Genome context

MA_10428970: 3896-4036 [-]

Mature pab-miR11523c-5p

• Accession: MIMAT0045095
• Description: Picea abies pab-miR11523c-5p mature miRNA
• Sequence: 23 - UCUGAGCAGAUUUAAUGCCCGA - 44
• Evidence: experimental ; Illumina [1]

Mature pab-miR11523c-3p

• Accession: MIMAT0057759
• Description: Picea abies pab-miR11523c-3p mature miRNA
• Sequence: 100 - AAAUUGGUCAAGAAGUUGAAGU - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918