Stem-loop pab-MIR11523d

Accession

MI0036998

Description

Picea abies pab-MIR11523d precursor miRNA

Sequence

608 reads, 82.0 reads per million, 77 experiments

ugagcuucaucuUCUGAGCAGAUUUAAUGCCCGAccccuacacagaaggauuuguuggaacaacaccaugcuuguaggguuggggguuuaaauugCUCAAGAAGUUGAAGUUGG
..(((((((.(((((((((((.((.(((.((((((((.((((.....((...(((((...))))))).....)))))))))))).))).)).)))))).))))).)))))))..

Structure

ug       u     -      A  U   G        c    cagaa  auu     g 
  agcuuca cuUCU GAGCAG UU AAU CCCGAccc uaca     gg   uguug  
  ||||||| ||||| |||||| || ||| |||||||| ||||     ||   ||||| a
  UUGAAGU GAAGA CUCguu aa uug ggguuggg augu     cc   acaac  
GG       U     A      a  u   g        -    ucgua  ---     a 

Annotation confidence Low

Genome context

MA_2634: 21932-22045 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11523d

Mature pab-miR11523d-5p

• Accession: MIMAT0045096
• Description: Picea abies pab-miR11523d-5p mature miRNA
• Sequence: 13 - UCUGAGCAGAUUUAAUGCCCGA - 34
• Evidence: experimental ; Illumina [1]

Mature pab-miR11523d-3p

• Accession: MIMAT0057760
• Description: Picea abies pab-miR11523d-3p mature miRNA
• Sequence: 96 - CUCAAGAAGUUGAAGUUGG - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918