Stem-loop pab-MIR11524

Accession

MI0036999

Description

Picea abies pab-MIR11524 precursor miRNA

Sequence

35401 reads, 1394.0 reads per million, 99 experiments

cagauuugucuaucagggUCUCCGGCGGCGUUCUUUGCUGaucugguaauuaauauaugcaagagcugcaagagaaccuucauacaccuuagcuuaucgagcuguuuaagcuucucgggcuauuugguauggacuuucucccacucccuucugcucaauguuaauguuauuaccgaaucauaugcuuccaagaucaacaaagaaCUCCCCGGAUAUCGAGAUggaaacaaauuug
((((((((((((((..(((.(((((.((.((((((((.((((((((((((.(((((..(((.((((((...(((((..(((((((....((((((...(((((.....)))))...))))))....)))))))..))))).)).........))))..)))..)))))))))))(((........)))..)))))).)))))))).))))))).)))..))))))..))))))))

Structure

        --      ag   C     C  C        C      ----------------      u     au   -a    ---------  caa     cc       accu      auc     g 
cagauuug  ucuauc  ggU UCCGG GG GUUCUUUG UGaucu                gguaau aauau  gca  gagc         ug   gagaa  uucauac    uagcuu   gagcu u
||||||||  ||||||  ||| ||||| || |||||||| ||||||                |||||| |||||  |||  ||||         ||   |||||  |||||||    ||||||   ||||| u
guuuaaac  aggUAG  CUA AGGCC CC Caagaaac acuaga                ccauua uugua  ugu  cucg         ac   cucuu  agguaug    aucggg   uucga u
        aa      AG   U     -  U        a      accuucguauacuaag      -     au   aa    ucuucccuc  --c     uc       guuu      cuc     a 

Annotation confidence Medium

Genome context

MA_5425: 24886-25120 [+]

Mature pab-miR11524-5p

• Accession: MIMAT0045097
• Description: Picea abies pab-miR11524-5p mature miRNA
• Sequence: 19 - UCUCCGGCGGCGUUCUUUGCUG - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR11524-3p

• Accession: MIMAT0057761
• Description: Picea abies pab-miR11524-3p mature miRNA
• Sequence: 205 - CUCCCCGGAUAUCGAGAU - 222
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918